Pha-MIR156b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GGACATGGTGGTGCTGT          -     -                 CA A    A    AATAC   - G T   TG G GA  AAAG
                   GGCTGACAGA AGAGA GTGAGCACGCAGCGGCA  G CTGC TCTG     GGC T C TCT  C A  TG    
                   |||||||||| ||||| |||||||||||||||||  | |||| ||||     ||| | | |||  | |  ||     
                   TCGACTGTCT TCTCT CACTCGTGCGTTGTCGT  C GACG AGAT     CCG A G AGG  G T  GC    
TCAGGGCTCCTCCTCTCTC          C     T                 -- -    C    -----   T G T   TA G GG  AGCA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.1G031800.1 1.0 NA NA
PhHAL.1G053500.1 1.0 1 NA
PhHAL.2G302100.1 1.0 NA NA
PhHAL.2G313900.1 1.0 NA NA
PhHAL.2G372100.1 1.0 1 NA
PhHAL.2G372200.1 1.0 1 NA
PhHAL.5G037100.1 1.0 NA NA
PhHAL.6G248800.1 1.0 NA NA
PhHAL.6G265100.1 1.0 NA NA
PhHAL.7G237000.1 1.0 NA NA
PhHAL.8G162200.1 1.0 NA NA
PhHAL.4G067300.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference