PmiREN: Plant microRNA Encyclopedia

Pha-MIR160b

Basic info.

miRNA locus ID
Pha-MIR160b

miRNA locus accession
PmiREN016194

Organism
Panicum hallii

Genomic location
Pha-Chr02 1595667 1595806 -

Comments
A member of family MIR160

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

                AAACTA   AA     C    T  C         C     -        ACCTG     -   GA
         GAGGTGA      GGG  TATGC TGGC CC TGTATGCCA TCGCA CGGCTACC     GATCG TCG  
         |||||||      |||  ||||| |||| || ||||||||| ||||| ||||||||     ||||| |||  G
         CTCTACT      CCC  GTACG ACCG GG GCGTGCGGT GGCGT GCCGGTGG     CTAGC AGT  
TCTCTCTCT       ------   -G     A    T  A         C     C        -----     T   TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
PhHAL.4G038200.1	0.0	NA	NA
PhHAL.7G214800.1	0.0	NA	NA
PhHAL.7G342900.1	0.5	NA	NA
PhHAL.1G307900.1	1.0	NA	NA
PhHAL.9G210900.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pha-MIR160b

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