Pha-MIR160e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
AGGTGAAAAGCTA      ----    C       C         C    -    CT      C G CC   CGA  T   C   GC
             GGGGAT    ATGC TGGCTCC TGTATGCCA TCGC GTAG  GCCAGC A G  AGT   GC CCC CAG  
             ||||||    |||| ||||||| ||||||||| |||| ||||  |||||| | |  |||   || ||| |||  T
             TCTCTA    TACG ACCGAGG GCGTGCGGT GGCG CATC  CGGTCG T C  TCA   TG GGG GTC  
  CTCTCTCTCTC      CCAG    A       A         A    T    -T      T G -A   -TG  C   T   GA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.4G038200.1 0.0 NA NA
PhHAL.7G214800.1 0.0 NA NA
PhHAL.7G342900.1 0.5 NA NA
PhHAL.1G307900.1 1.0 NA NA
PhHAL.9G210900.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference