Pha-MIR164c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    T       GGC     A           CA         CATT        AT  C  CATTATTCCGGCCGCTCCATGCTCCTCCTACTCTGGGCT
     AGACGGT   TGTGC TGGTGGAGAAG  GGGCACGTG    ACCATCCA  GC GC                                       
     |||||||   ||||| |||||||||||  |||||||||    ||||||||  || ||                                        
     TCTGTCA   ACACG GCCACCTCTTC  CCCGTGTAC    TGGTAGGT  GT AC                                       
ACGAC       --A     A           TA         TTCT        AG  -  CTAGGTACAGGTACGTAGGTAGGTATTGCCAACCACTCG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.3G469200.1 1.0 0 NA
PhHAL.4G048000.1 1.0 NA NA
PhHAL.1G275700.1 1.5 2 NA
PhHAL.7G169300.1 1.5 2 NA
PhHAL.6G060800.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference