PmiREN: Plant microRNA Encyclopedia

Pha-MIR169a

Basic info.

miRNA locus ID
Pha-MIR169a

miRNA locus accession
PmiREN016221

Organism
Panicum hallii

Genomic location
Pha-Chr06 41090757 41090892 +

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

            GCTG       T   -           A  T       -  C   C  G         ATTTT
      ATAAGA    ACCATCC GGT AGCCAAGGATG CT GCCTGTG GA TCG TC CTTGCTTGT     
      ||||||    ||||||| ||| ||||||||||| || ||||||| || ||| || |||||||||     G
      TATTCT    TGGTAGG CCG TCGGTTCCTAT GA CGGATAC CT AGT AG GGACGGACG     
ACTTCC      ----       C   A           -  -       T  -   C  G         AGGTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
PhHAL.1G409700.1	2.0	1	NA
PhHAL.2G429900.1	2.0	NA	NA
PhHAL.3G474700.1	2.0	NA	NA
PhHAL.9G147500.1	2.0	NA	NA
PhHAL.9G445600.1	2.0	NA	NA
PhHAL.9G594500.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pha-MIR169a

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