Pha-MIR169c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     A     AG  T  T     C      A              --T    A  -TCT  A       -TG   AA
      GTAAG  GG CA CTTTG TAGCCA GGATGATTTGCCTG   AGCC CC    GC TGCTCCT   TGC  
      |||||  || || ||||| |||||| ||||||||||||||   |||| ||    || |||||||   |||   
      CATTC  CC GT GAGAC ATCGGT CCTACTAAACGGGC   TTGG GG    CG GCGAGGA   ACG  
CTATCG     -G  -  -     C      -              CTC    C  TCAT  -       CTA   GT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.9G147500.1 1.0 NA NA
PhHAL.1G409700.1 2.0 1 NA
PhHAL.2G429900.1 2.0 NA NA
PhHAL.3G474700.1 2.0 NA NA
PhHAL.9G445600.1 2.0 NA NA
PhHAL.9G594500.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference