Pha-MIR172

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AACAGTC    C    A         C           A   CAAACTCA  TT   T      C  GT
         GGTG TTGC GGTGCAGCA CATCAAGATTC CAT        TC  CAG TATGCG TG  
         |||| |||| ||||||||| ||||||||||| |||        ||  ||| |||||| ||  T
         TCAC GACG CTACGTCGT GTAGTTCTAAG GTA        AG  GTC ATACGT AC  
ACTACTCAC    A    A         A           A   -------C  TT   C      C  GC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.2G079000.1 0.5 NA NA
PhHAL.3G094700.1 0.5 NA NA
PhHAL.9G031900.1 0.5 NA NA
PhHAL.4G073900.1 1.5 NA NA
PhHAL.5G002900.1 2.0 1 NA
PhHAL.7G234400.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference