Pha-MIR319

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   TGGCC  T   C   T   A A                 CT   G  A     TA        ----   G  G   AC        C  CA   C    ---AC  GC
        GC GGC GGA GGA G GAGCGTCCTTCAGTCCA  CAG GG GGTGC  GGGTCGAA    TTA CT CCG  TCATTCAC CA  TGC AAGC     CC  
        || ||| ||| ||| | |||||||||||||||||  ||| || |||||  ||||||||    ||| || |||  |||||||| ||  ||| ||||     ||  C
        CG TCG CCT CCT C CTCGTGGGAAGTCAGGT  GTT CT CCACG  TCTAGCTT    AAT GA GGC  AGTAAGTG GT  ACG TTCG     GG  
GAATCATT  T   T   -   C -                 TC   G  A     -C        CCAA   G  G   GA        A  AC   A    AGAAA  TA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.1G046000.1 1.5 NA NA
PhHAL.2G026200.1 1.5 NA NA
PhHAL.9G059200.1 1.5 NA NA
PhHAL.3G473900.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference