Pha-MIR390

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   AG    T       T  T  A         G         CTA   AATCAT     T      --A -GA                -   -  ---   GTG
     GGTA GGAACAA CC TG AGCTCAGGA GGATAGCGC   GGA      TAGAT GGAGCC   C   GGAGAAAGAGATCGAG AGA CG   TAC   
     |||| ||||||| || || ||||||||| |||||||||   |||      ||||| ||||||   |   |||||||||||||||| ||| ||   |||    
     CCAT TCTTGTT GG AC TCGAGTCCT TCTATCGCG   TCT      ATCTG TCTTGG   G   TCTCTTTCTCTGGCTC TCT GC   GTG   
ATTGA    -       C  C  C         A         AAG   --AACT     -      ATC AAG                G   A  TAA   TGC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.9G033100.1 0.0 NA NA
PhHAL.7G226200.1 0.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference