PmiREN: Plant microRNA Encyclopedia

Pha-MIR393a

Basic info.

miRNA locus ID
Pha-MIR393a

miRNA locus accession
PmiREN016241

Organism
Panicum hallii

Genomic location
Pha-Chr05 55101116 55101253 -

Comments
A member of family MIR393

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AAC    C           A                T     A   TT  TTC   CCTTCCATGGTGCG
     AATG CTGGGGGAAGC TCCAAAGGGATCGCAT GATCC TCA  CC   CAT              
     |||| ||||||||||| |||||||||||||||| ||||| |||  ||   |||               
     TTAC GATCTCCTTCG AGGTTTTCCTAGCGTA CTAGG AGT  GG   CAC              
CCTCA    C           G                -     C   TC  ---   GAACAATCTGCTAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
PhHAL.3G113500.1	1.0	NA	NA
PhHAL.7G120400.1	1.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pha-MIR393a

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