PmiREN: Plant microRNA Encyclopedia

Pha-MIR394

Basic info.

miRNA locus ID
Pha-MIR394

miRNA locus accession
PmiREN016243

Organism
Panicum hallii

Genomic location
Pha-Chr01 50961937 50962063 +

Comments
A member of family MIR394

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     C       TGGG      -      TTC           TTGCC   - TT     AAGCCT
   GG GGCTTAC    AGTTCC TTGGCA   TGTCCACCTCC     GAT C  GCAGA      
   || |||||||    |||||| ||||||   |||||||||||     ||| |  |||||       
   CC CCGGATG    TCGAGG AACCGT   ACGGGTGGAGG     TTG G  TGTCT      
TTC  T       --TG      T      CAT           TTTTT   T TT     AAACTC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
PhHAL.5G035800.1	0.0	NA	NA
PhHAL.9G101100.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pha-MIR394

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