Pha-MIR396a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TTCA -    -----   C   GC                   A     CCCTCC  CCCCCGCCCCCCCAAACCCAACACCCCCCCCCCCCCC
    A GTCC     ATG CAT  CTTTCCACAGCTTTCTTGA CTTCT      GC                                     
    | ||||     ||| |||  ||||||||||||||||||| |||||      ||                                      
    T CAGG     TAC GTA  GAAGGGTGTCGAAAGAACT GAAGA      GT                                     
     T    AACAA   A   AA                   G     --AGAT  TGAACGTGCGCGTTAACTAAAATTCTCTCGCCCCCCC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.1G426900.1 0.0 NA NA
PhHAL.6G259300.1 1.5 NA NA
PhHAL.5G279000.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference