PmiREN: Plant microRNA Encyclopedia

Pha-MIR396d

Basic info.

miRNA locus ID
Pha-MIR396d

miRNA locus accession
PmiREN016253

Organism
Panicum hallii

Genomic location
Pha-Chr04 47699944 47700068 -

Comments
A member of family MIR396

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AG ---       -       ATC            C           ------CC    -A     GC
  C   TGGCCTC CTCTGTG   TTCCACAGCTTT TTGAACTGCAT        GCAA  GGGAG  
  |   ||||||| |||||||   |||||||||||| |||||||||||        ||||  |||||   
  G   ACCGGAG GAGACGT   AGGGTGTCGAAA AACTTGACGTG        CGTT  TCTTC  
   TTA       A       CAA            T           CACAAGTA    CA     CG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
PhHAL.1G426900.1	0.0	NA	NA
PhHAL.6G259300.1	1.5	NA	NA
PhHAL.5G279000.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pha-MIR396d

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