Pha-MIR396e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    AA    G     G    C      CA                G   -----TCG     GCATGTCGGATGAACGCAAACTCCCCCCAGCAATTCTCTT
      AGGT CGCGG CATG TTTCCA  GGCTTTCTTGAACTGT AAC        TGGGG                                        
      |||| ||||| |||| ||||||  |||||||||||||||| |||        |||||                                        A
      TCCG GCGTC GTAC AAAGGT  CCGAAAGAACTTGGTA TTG        GGCGG                                        
GTGCTC    -     -    C      AC                G   TCCATCTC     GAAACCGCTCGGCTATCGAGCCGTTAAGTTAAGTGCCCCC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.1G339800.1 0.0 0 NA
PhHAL.1G354300.1 0.0 NA NA
PhHAL.1G410300.1 0.0 0 NA
PhHAL.4G303200.1 0.0 0 NA
PhHAL.4G359100.1 0.0 NA NA
PhHAL.7G270500.1 0.0 NA NA
PhHAL.9G133900.1 0.0 NA NA
PhHAL.8G201900.1 1.5 NA NA
PhHAL.9G100200.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference