Pha-MIR397

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
      A    C    A   ATC    A           A      --   GA  -----T     GG
    GA GGGG GCAA GGC   ATTG GTGCAGCGTTG TGAGCC  GGC  GG      CCGGC  
    || |||| |||| |||   |||| ||||||||||| ||||||  |||  ||      |||||   
    CT CTCT CGTT CCG   TAAC CACGTCGCGGC ACTCGG  CCG  CC      GGCCG  
CGGT  -    -    C   CAT    C           C      CG   GC  TTTACC     TC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.5G095700.1 0.5 NA NA
PhHAL.3G340600.1 1.0 NA NA
PhHAL.3G005100.1 1.5 NA NA
PhHAL.5G090500.1 1.5 1 NA
PhHAL.8G006100.1 1.5 NA NA
PhHAL.2G000900.1 2.0 NA NA
PhHAL.3G243100.1 2.0 NA NA
PhHAL.5G076800.1 2.0 NA NA
PhHAL.5G090700.1 2.0 NA NA
PhHAL.5G095800.1 2.0 NA NA
PhHAL.5G108400.1 2.0 NA NA
PhHAL.8G248000.1 2.0 2 NA
PhHAL.9G525300.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference