PmiREN: Plant microRNA Encyclopedia

Pha-MIR398

Basic info.

miRNA locus ID
Pha-MIR398

miRNA locus accession
PmiREN016257

Organism
Panicum hallii

Genomic location
Pha-Chr02 9065441 9065568 -

Comments
A member of family MIR398

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AACGCAAGGGAGCTC T  A       G   C           A GA       -GCC    T
                 C GC GGGGCGA CTG GAACACATGCG G  TTACCGG    GTGG 
                 | || ||||||| ||| ||||||||||| |  |||||||    |||| C
                 G CG CCCCGCT GAC CTTGTGTACGT C  GATGGCC    CGCC 
GCCGTCGCTCCTCCCGG C  C       G   T           A GG       GCTC    G

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
PhHAL.2G207200.1	2.0	NA	NA
PhHAL.3G150600.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pha-MIR398

>