PmiREN: Plant microRNA Encyclopedia

Pha-MIR399b

Basic info.

miRNA locus ID
Pha-MIR399b

miRNA locus accession
PmiREN016259

Organism
Panicum hallii

Genomic location
Pha-Chr04 49665158 49665381 -

Comments
A member of family MIR399

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GCT      A      A     -          C         ATCGATCGATCATCGACGGGTGTGCAGTCGATCGAGGACTCGAGGTGTCCATGCATGATGCAACTGCA
     AGCTGA GACAGT GTAGG CAGCTCTCCT TGGCAGGTG                                                                    
     |||||| |||||| ||||| |||||||||| |||||||||                                                                    T
     TCGACT CTGTCA CGTCC GTTGAGAGGA ACCGTCCTG                                                                    
ACAAT      C      G     C          A         TATGCAGACTAGGCCACTCAGCTAGTTCCTGGTGCGGTTGGGTAACCGGGTGCACGTACGTACGTACT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
PhHAL.3G174900.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pha-MIR399b

>