Pvi-MIR156l

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 GTGG     -T  -AT  CTA         -     -        A      G   A        A  --------C   CC
     GGGCT  CC   GG   ACTGACAGA AGAGA GTGAGCAC CAGCGG CAG CTGCATCG TC         GCA  
     |||||  ||   ||   ||||||||| ||||| |||||||| |||||| ||| |||||||| ||         |||   
     TCCGG  GG   CC   TGACTGTCT TCTCT CACTCGTG GTCGTC GTC GACGTAGT AG         CGT  
CCCTC     TC  CCT  -TC         C     T        C      -   -        A  CAGAGCTAA   TT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.2KG323200.1 0.0 0 NA
Pavir.1KG076500.1 1.0 1 NA
Pavir.1NG068600.1 1.0 1 NA
Pavir.4KG340200.1 1.0 NA NA
Pavir.4KG366000.1 1.0 1 NA
Pavir.5KG736000.1 1.0 NA NA
Pavir.5KG740800.1 1.0 NA NA
Pavir.6NG323100.1 1.0 NA NA
Pavir.6NG327200.1 1.0 1 NA
Pavir.1KG043600.1 2.0 NA NA
Pavir.1NG028400.1 2.0 NA NA
Pavir.2KG430000.1 2.0 2 NA
Pavir.2KG430400.1 2.0 2 NA
Pavir.2NG390400.1 2.0 NA NA
Pavir.2NG419300.1 2.0 NA NA
Pavir.2NG422000.1 2.0 NA NA
Pavir.2NG503500.1 2.0 2 NA
Pavir.2NG503700.1 2.0 NA NA
Pavir.4KG371500.1 2.0 NA NA
Pavir.4NG258200.1 2.0 NA NA
Pavir.6NG315100.1 2.0 1 NA
Pavir.7KG279200.1 2.0 NA NA
Pavir.8KG346000.1 2.0 1 NA
Pavir.8NG253200.1 2.0 NA NA
Pavir.J565400.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference