Pvi-MIR156n

Basic info.

• miRNA locus ID
• Pvi-MIR156n

• miRNA locus accession
• PmiREN016289

• Organism
• Panicum virgatum

• Genomic location
• Pvi-Chr08K  8043021  8043178  +

• Comments
• A member of family MIR156

• Confidence level
• 

Secondary strurture and sequence

     T  TGT  AT    ------C         -    -         A      T   A       --------    -C  GCCTTT
 GCAG GG   CC  GGCT       ACTGACAGA AGAG AGTGAGCAC CAGCGG CAG TTGCATC        GATC  CT      
 |||| ||   ||  ||||       ||||||||| |||| ||||||||| |||||| ||| |||||||        ||||  ||      A
 CGTC CC   GG  CCGG       TGACTGTCT TCTC TCACTCGTG GTTGTC GTC GACGTAG        CTAG  GA      
T    -  --T  --    ACTCTAC         C    A         C      -   -       TAGTAAGT    CA  GCCAAC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Field-grown miR156 transgenic switchgrass reproduction, yield, global gene expression analysis, and bioconfinement. Biotechnol Biofuels, 2017
• >The miR156-SPL4 module predominantly regulates aerial axillary bud formation and controls shoot architecture. New Phytol, 2017
• >Switchgrass SBP-box transcription factors PvSPL1 and 2 function redundantly to initiate side tillers and affect biomass yield of energy crop. Biotechnol Biofuels, 2016
• >Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production. Plant Biotechnol J, 2012