Pvi-MIR156q

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  ACATGATGGTGTGCTGTG         -     -                C  A         AAAT    ----AATA   GG
                    GCTGACAGA AGAGA GTGAGCATGCAGCGGC AG CTGCATCTG    TCTG        CGC  
                    ||||||||| ||||| |||||||||||||||| || |||||||||    ||||        |||   
                    CGACTGTCT TCTCT CACTCGTGCGTTGTCG TC GACGTAGAT    GGAC        GTG  
CTTGTCAGGGCTCCTCCTTA         C     T                -  -         --CC    GTAGGTAG   GG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.2KG323200.1 0.0 0 NA
Pavir.1KG043600.1 1.0 NA NA
Pavir.1KG076500.1 1.0 1 NA
Pavir.1NG028400.1 1.0 NA NA
Pavir.1NG068600.1 1.0 1 NA
Pavir.2KG430000.1 1.0 1 NA
Pavir.2KG430400.1 1.0 1 NA
Pavir.2NG390400.1 1.0 NA NA
Pavir.2NG419300.1 1.0 NA NA
Pavir.2NG422000.1 1.0 NA NA
Pavir.2NG503500.1 1.0 1 NA
Pavir.2NG503700.1 1.0 NA NA
Pavir.4KG340200.1 1.0 NA NA
Pavir.4KG366000.1 1.0 1 NA
Pavir.5KG736000.1 1.0 NA NA
Pavir.5KG740800.1 1.0 NA NA
Pavir.6NG315100.1 1.0 1 NA
Pavir.6NG323100.1 1.0 NA NA
Pavir.6NG327200.1 1.0 1 NA
Pavir.7KG279200.1 1.0 NA NA
Pavir.8KG346000.1 1.0 1 NA
Pavir.8NG253200.1 1.0 NA NA
Pavir.J565400.1 1.0 NA NA
Pavir.4NG258200.1 2.0 NA NA
Pavir.6KG361700.1 2.0 NA NA
Pavir.7NG273800.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference