Pvi-MIR156u

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    A      GTCCT   -    A         -   -         C     CC C          GA
     TTAGGA     GGA AGAG TTGACAGAA GAG AGCGAGCAC CGGCG  G GGACGGCATG  
     ||||||     ||| |||| ||||||||| ||| ||||||||| |||||  | ||||||||||  G
     AGTCCT     TCT TCTC GACTGTCTT CTC TCGCTCGTG GCCGC  C CCTGCCGTAC  
GGGCC      ---GC   C    C         T   C         C     -- -          GC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.1KG043600.1 1.0 NA NA
Pavir.1NG028400.1 1.0 NA NA
Pavir.2NG390400.1 1.0 NA NA
Pavir.6NG315100.1 1.0 1 NA
Pavir.J565400.1 1.0 NA NA
Pavir.1KG076500.1 1.5 1 NA
Pavir.1NG068600.1 1.5 1 NA
Pavir.2KG323200.1 1.5 1 NA
Pavir.5KG736000.1 1.5 NA NA
Pavir.5KG740800.1 1.5 NA NA
Pavir.6NG323100.1 1.5 NA NA
Pavir.6NG327200.1 1.5 1 NA
Pavir.2KG430000.1 2.0 1 NA
Pavir.2KG430400.1 2.0 2 NA
Pavir.2NG419300.1 2.0 NA NA
Pavir.2NG422000.1 2.0 NA NA
Pavir.2NG503500.1 2.0 1 NA
Pavir.2NG503700.1 2.0 NA NA
Pavir.4KG371500.1 2.0 NA NA
Pavir.7KG279200.1 2.0 NA NA
Pavir.8KG346000.1 2.0 1 NA
Pavir.8NG253200.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference