PmiREN: Plant microRNA Encyclopedia

Pvi-MIR159a

Basic info.

miRNA locus ID
Pvi-MIR159a

miRNA locus accession
PmiREN016297

Organism
Panicum virgatum

Genomic location
Pvi-Chr05K 15253948 15254108 -

Comments
A member of family MIR159

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

       TT   -        A     G    T     GTTC    TGT         ------   GC    AG  AGA    GT
  GGTCG  CGA AGGGTGGT CAGCT CTCG TCATG    CCAC   CCTATCTCA      TCG  TTTG  AG   GATT  
  |||||  ||| |||||||| ||||| |||| |||||    ||||   |||||||||      |||  ||||  ||   ||||   
  CCAGT  GTT TCCTGCTA GTCGA GAGC AGTAC    GGTG   GGATAGAGT      AGT  GAGC  TC   CTAG  
CG     -C   C        C     G    C     GTTT    TTC         TTGGTT   -A    GA  GAG    AG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.1KG545200.1	2.0	1	NA
Pavir.1NG556600.1	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvi-MIR159a

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