PmiREN: Plant microRNA Encyclopedia

Pvi-MIR159c

Basic info.

miRNA locus ID
Pvi-MIR159c

miRNA locus accession
PmiREN016299

Organism
Panicum virgatum

Genomic location
Pvi-Chr05N 16044188 16044343 -

Comments
A member of family MIR159

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GTCCTTTCGAAGGGT         G    T     GTTC    TGT  T      -------   G   -TG   GACATT
                 GGTGCAGCT CTCG TCATG    CCAC   CC ATCTCA       TCG CTT   AGA      
                 ||||||||| |||| |||||    ||||   || ||||||       ||| |||   |||       
                 CTACGTCGA GAGC AGTAC    GGTG   GG TAGAGT       AGT GAG   TCT      
CGCCAGTCGTTCCCCTG         G    C     GTTT    TTC  C      TTTGGTT   G   TGA   AGAGTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.1KG545200.1	2.0	1	NA
Pavir.1NG556600.1	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvi-MIR159c

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