Pvi-MIR159e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GGATGGTTGGATTGGAA           A   T     T  AA    CTTTC  -T   -T    A     G    T     GTTC    -T  T         T   CTGGAGGGTTTATCTGAAAGAGAGGGT
                 GCGGAGCTCCT TCA TCCAA GA  GGCC     GC  GGG  TGGT CAGCT CTCG TCATG    CCAC  AG CCTATCTCA CAC                           
                 ||||||||||| ||| ||||| ||  ||||     ||  |||  |||| ||||| |||| |||||    ||||  || ||||||||| |||                           G
                 CGTCTCGAGGG AGT AGGTT CT  CCGG     CG  CCC  GCCA GTCGA GAGC AGTAC    GGTG  TC GGATAGAGT CGG                           
              CTG           A   T     T  CG    ----T  TT   CT    C     G    C     GTTC    TT  -         T   TTTGTGGTCCGGTGAGTACTGAGTAGA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.5KG021900.1 0.5 0 NA
Pavir.2KG407800.1 1.5 1 NA
Pavir.1KG066900.1 2.0 NA NA
Pavir.2KG411700.1 2.0 2 NA
Pavir.5KG592000.1 2.0 NA NA
Pavir.5KG598200.1 2.0 NA NA
Pavir.5NG548200.1 2.0 NA NA
Pavir.6KG359100.1 2.0 2 NA
Pavir.6NG301900.1 2.0 2 NA
Pavir.7KG277700.1 2.0 2 NA
Pavir.7NG272700.1 2.0 2 NA
Pavir.J316300.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference