Pvi-MIR164c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
CGATGGCG     C   A       A  C             ---   TTCTTGCTTCCCTCGATCTCGCCGGCTTGGCATTCCGGCCGCCTCTCGCGCGCGCCGCTGCGTGCGCGCGGCGAGCGCGTG
        AGGTG GCG GGTGGAG AG AGGGCACGTGCAT   GCA                                                                                 
        ||||| ||| ||||||| || |||||||||||||   |||                                                                                 A
        TCCGC CGT CCACCTC TC TCCCGTGTACGTA   GTC                                                                                 
             A   G       C  T             GTA   GGGCGAAGTCCTCGATCGAGATCTACCGACGACGATATCGGCCGGCCGGCCGTCCGCCGTTGGTGTTTATAGGGCAGCGAG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.3KG535100.1 1.0 0 NA
Pavir.3NG284800.1 1.0 0 NA
Pavir.4KG410000.1 1.0 NA NA
Pavir.4NG304800.1 1.0 NA NA
Pavir.J421900.1 1.0 1 NA
Pavir.1KG348000.1 1.5 2 NA
Pavir.1NG319100.1 1.5 2 NA
Pavir.4KG201700.1 1.5 0 NA
Pavir.4NG110800.1 1.5 0 NA
Pavir.7NG176200.1 1.5 2 NA
Pavir.J550100.1 1.5 2 NA
Pavir.5NG543800.1 2.0 NA NA
Pavir.6KG096000.1 2.0 1 NA
Pavir.6NG091700.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference