Pvi-MIR164h

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    T             CCC  T        CA           ---      GACACA   A  CCGGAGCACGGCCGGACTCGCGCAACTGCGTGTGG
     TGGTGAGAAGGTT   TG TGGAGAAG  GGGTACGTGCA   GCTAGC      CGT CG                                   
     |||||||||||||   || ||||||||  |||||||||||   ||||||      ||| ||                                    
     ACCATTCTTCCGG   AC ACCTCTTC  CTCGTGCACGT   CGATCG      TCT CG                                   
CCTCC             --T  C        CC           CCT      -----A   -  TTTTTTCGAGGGAGCGGAGCGGAGCTGCGCTGGCT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.3KG535100.1 1.5 0 NA
Pavir.3NG284800.1 1.5 0 NA
Pavir.4KG410000.1 1.5 NA NA
Pavir.4NG304800.1 1.5 NA NA
Pavir.J421900.1 1.5 1 NA
Pavir.1KG348000.1 2.0 2 NA
Pavir.1NG319100.1 2.0 2 NA
Pavir.4KG201700.1 2.0 0 NA
Pavir.4NG110800.1 2.0 0 NA
Pavir.7NG176200.1 2.0 2 NA
Pavir.J550100.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference