Pvi-MIR166a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
               TGCT      T      TT         A         CTGC         -     TCT GT
      GAAGCTATT    TCTGAG GGAATG  GTCTGGTTC AGGTCTTGC    GATTCGAGG ATGAA   C  
      |||||||||    |||||| ||||||  ||||||||| |||||||||    ||||||||| |||||   |  G
      CTTCGATAG    AGACTC CCTTAC  CGGACCAGG TCTAGGGCG    CTAAGCTCC TACTT   G  
AGAAAA         ----      C      TT         C         ---T         A     TTT AT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.8KG068100.1 0.5 1 NA
Pavir.2NG351100.1 1.0 1 NA
Pavir.3KG537000.1 1.0 NA NA
Pavir.3NG283000.1 1.0 NA NA
Pavir.5KG046400.1 1.0 NA NA
Pavir.5NG046500.1 1.0 NA NA
Pavir.5NG049400.1 1.0 NA NA
Pavir.7NG435600.1 1.0 NA NA
Pavir.9KG074600.1 1.0 NA NA
Pavir.9KG182300.1 1.0 NA NA
Pavir.9KG558300.1 1.0 NA NA
Pavir.9NG188400.1 1.0 NA NA
Pavir.9NG791600.1 1.0 NA NA
Pavir.1NG346400.1 1.5 NA NA
Pavir.J790000.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference