Pvi-MIR166e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GGTTGAAGAATA              TT         A         CAAGCA    A  CCATGCATTTTGTTTAACATGCAGTATT
              AGTTAAGGGGGTTG  GTCTGGTTC AGGTCGCCA      GGCA AC                            
              ||||||||||||||  ||||||||| |||||||||      |||| ||                            C
              TCAATTTCCCTAAC  CGGACCAGG TCTAGTGGT      TATC TA                            
TACGTCTATTATGA              TT         C         ------    -  GCTATTTGTGGGTACTCAGTACTGGGTA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.2NG351100.1 0.0 0 NA
Pavir.8KG068100.1 1.5 2 NA
Pavir.1NG346400.1 2.0 NA NA
Pavir.3KG537000.1 2.0 NA NA
Pavir.3NG283000.1 2.0 NA NA
Pavir.5KG046400.1 2.0 NA NA
Pavir.7NG435600.1 2.0 NA NA
Pavir.9KG074600.1 2.0 NA NA
Pavir.9KG182300.1 2.0 NA NA
Pavir.9KG558300.1 2.0 NA NA
Pavir.9NG188400.1 2.0 NA NA
Pavir.9NG791600.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference