Pvi-MIR166k

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TTGG       ------               TT G    C    G  A  -  ---C    TA  T   TT    AT
    TCATGGG      GGCTTGTGGGGGATG  G CTGG TCGA GC TC CG    GTCC  GC AGC  GCAG  
    |||||||      |||||||||||||||  | |||| |||| || || ||    ||||  || |||  ||||   
    GGTACCT      CCGAACGCTCCTTAC  C GACC GGCT CG AG GC    CGGG  CG TCG  CGTC  
           ATGTGA               TT G    A    A  G  A  TAGA    -C  -   TC    AC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.8KG068100.1 0.5 0 NA
Pavir.2NG351100.1 1.0 1 NA
Pavir.3KG537000.1 1.0 NA NA
Pavir.3NG283000.1 1.0 NA NA
Pavir.5KG046400.1 1.0 NA NA
Pavir.5NG046500.1 1.0 NA NA
Pavir.5NG049400.1 1.0 NA NA
Pavir.7NG435600.1 1.0 NA NA
Pavir.9KG074600.1 1.0 NA NA
Pavir.9KG182300.1 1.0 NA NA
Pavir.9KG558300.1 1.0 NA NA
Pavir.9NG188400.1 1.0 NA NA
Pavir.9NG791600.1 1.0 NA NA
Pavir.1NG346400.1 1.5 NA NA
Pavir.J790000.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference