Pvi-MIR166q

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
          T   GTC    A        TT      C      ---     GC    -    TGA       CTT       --      G TCGCTTC
    GAGCCT TTC   TTTG GGGGAATG  GTCTGG TCGGGG   GCGCC  TCTT TCTC   CCTGCCC   TCTCCTC  CATCTC A       
    |||||| |||   |||| ||||||||  |||||| ||||||   |||||  |||| ||||   |||||||   |||||||  |||||| |       C
    CTCGGG AGG   AAAC CCCCTTAC  CGGACC GGCTCT   TGTGG  AGAG AGAG   GGACGGG   AGAGGAG  GTAGAG T       
GTCC      T   --A    C        TT      A      AGA     GC    G    TGG       --T       AA      G TCTCTCT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.8KG068100.1 0.5 1 NA
Pavir.2NG351100.1 1.0 1 NA
Pavir.3KG537000.1 1.0 NA NA
Pavir.3NG283000.1 1.0 NA NA
Pavir.5KG046400.1 1.0 NA NA
Pavir.5NG046500.1 1.0 NA NA
Pavir.5NG049400.1 1.0 NA NA
Pavir.7NG435600.1 1.0 NA NA
Pavir.9KG074600.1 1.0 NA NA
Pavir.9KG182300.1 1.0 NA NA
Pavir.9KG558300.1 1.0 NA NA
Pavir.9NG188400.1 1.0 NA NA
Pavir.9NG791600.1 1.0 NA NA
Pavir.1NG346400.1 1.5 NA NA
Pavir.J790000.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference