PmiREN: Plant microRNA Encyclopedia

Pvi-MIR167a

Basic info.

miRNA locus ID
Pvi-MIR167a

miRNA locus accession
PmiREN016346

Organism
Panicum virgatum

Genomic location
Pvi-Chr01K 7103042 7103293 -

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

               -       T         C           A      AAAC    ATCGGTTTTCAGGGTCTAGTCATACCGCAATGCGAGAGGGTTAGTGATAGTTTGGTGATATATATGGCCGGT
       TGGTGGTG TGAGAGA TGAAGCTGC AGCATGATCTG GGACCC    AACC                                                                        
       |||||||| ||||||| ||||||||| ||||||||||| ||||||    ||||                                                                         
       ACCACCGC ACTCTCT ACTTCGACG TTGTACTAGAC TACTGA    CTGG                                                                        
CTAGGAA        C       C         -           -      ----    TTCGTACGTACGAGTGTTTAAGTCTTTGGTATAGTCTTCTGGGTTCTTAGGGAGGAGGTGAATTGTATGAGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.4NG178100.1	2.0	NA	NA
Pavir.9NG197900.1	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvi-MIR167a

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