PmiREN: Plant microRNA Encyclopedia

Pvi-MIR167c

Basic info.

miRNA locus ID
Pvi-MIR167c

miRNA locus accession
PmiREN016348

Organism
Panicum virgatum

Genomic location
Pvi-Chr01N 6499255 6499520 -

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GTTTTGGTGGTGTG    AT         C          -      --  AAACAA  ---  CG TTTTCAGGGTTTAGTCATACCGCAATGCGAGGGGAAGATGCTGGCTCTTAAGGATTAGTGATAGTTTGGTGA
              AGAG  TGAAGCTGC AGCATGATCT GAGGGC  CC      CC   AT  G                                                                        
              ||||  ||||||||| |||||||||| ||||||  ||      ||   ||  |                                                                        C
              TCTC  ACTTCGACG TTGTACTAGA TACTGA  GG      TT   AC  G                                                                        
                  --         -          C      CT  ------  CGT  -- TACAAGTGTTTAAGTCTTCGGTATAGTCTTCTGGGTTCTTAAGGAGGAGGTCAATTGGTGAGTTGGGGTATA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.4NG178100.1	2.0	NA	NA
Pavir.9NG197900.1	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvi-MIR167c

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