PmiREN: Plant microRNA Encyclopedia

Pvi-MIR167d

Basic info.

miRNA locus ID
Pvi-MIR167d

miRNA locus accession
PmiREN016349

Organism
Panicum virgatum

Genomic location
Pvi-Chr02K 10591843 10591977 -

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TTGGTGCATCC    G    ---         -C            -  --        A   GCAAG   AC
           TCTA GAGC   TGAAGCTGC  AGCATGATCTGA CG  AGTGTTTA TTA     TTG  
           |||| ||||   |||||||||  |||||||||||| ||  |||||||| |||     |||   
           GGGT CTCG   ACTTTGACG  TCGTACTAGACT GC  TCGTAAGT AGT     GAC  
 GACGACACGT    G    TCT         TT            A  AA        -   --AAA   CC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.4NG178100.1	2.0	NA	NA
Pavir.9NG197900.1	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvi-MIR167d

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