PmiREN: Plant microRNA Encyclopedia

Pvi-MIR167q

Basic info.

miRNA locus ID
Pvi-MIR167q

miRNA locus accession
PmiREN016362

Organism
Panicum virgatum

Genomic location
Pvi-Chr03N 51699091 51699248 -

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CAA     ---   -     T      A    C  -            TT     G   TCATT  CA   AAACA   -   -  AG
   ATGCT   CGT GTGAA GAGTGA GCTG CA GCATGATCTAGC  TGGTT GCA     GG  CAC     CAG TCA CC  
   |||||   ||| ||||| |||||| |||| || ||||||||||||  ||||| |||     ||  |||     ||| ||| ||  A
   TACGA   GTA CACTT TTTACT CGAC GT CGTACTAGATTG  ACTAA CGT     CC  GTG     GTC GGT GG  
  G     CTT   A     C      C    A  A            TT     A   -----  AG   -----   C   T  CT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.4NG178100.1	2.0	NA	NA
Pavir.9NG197900.1	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvi-MIR167q

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