PmiREN: Plant microRNA Encyclopedia

Pvi-MIR168a

Basic info.

miRNA locus ID
Pvi-MIR168a

miRNA locus accession
PmiREN016369

Organism
Panicum virgatum

Genomic location
Pvi-Chr01K 3562224 3562331 -

Comments
A member of family MIR168

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GA   C C    C   G  C             AT     C   ACG    CGC
    CGC G GCCG CTC GG TCGCTTGGTGCAG  CGGGA CCG   CCCG   
    ||| | |||| ||| || |||||||||||||  ||||| |||   ||||    
    GCG C CGGC GAG CT AGTGAACCACGTT  GCCCT GGC   GGGC   
AATA   A A    C   G  A             CC     A   --A    CGC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.9NG422300.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvi-MIR168a

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