Pvi-MIR169a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
         G        GTTTTCT             ---AT             -   ---    --TG    CCA  --      T    TGCGGCATTGCAC
          GAGGCCGT       TGTGTAGCCAAGG     GACTTGCCGGCCG TTG   TCTC    GCAG   AC  GCGCGC TGCC             
          ||||||||       |||||||||||||     ||||||||||||| |||   ||||    ||||   ||  |||||| ||||             G
          CTCCGGTA       GCACATCGGTTTC     TTGGACGGCCGGC AAC   AGAG    CGTC   TG  CGCGCG CGTG             
TACTCTTCTG        -------             GCTTC             C   TAA    CGTA    ACA  TA      -    CTTGCTTGCGCAC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.7NG409200.1 0.5 0 NA
Pavir.2KG529900.1 1.0 NA NA
Pavir.9NG010000.1 1.0 2 NA
Pavir.5KG182400.1 1.5 1 NA
Pavir.5NG173400.1 1.5 1 NA
Pavir.1NG526800.1 2.0 2 NA
Pavir.1NG528900.1 2.0 2 NA
Pavir.2NG583300.1 2.0 NA NA
Pavir.3KG549800.1 2.0 NA NA
Pavir.3KG551100.1 2.0 2 NA
Pavir.3NG276300.1 2.0 NA NA
Pavir.9KG069000.1 2.0 2 NA
Pavir.9KG612800.1 2.0 NA NA
Pavir.9NG184100.1 2.0 NA NA
Pavir.9NG726300.1 2.0 2 NA
Pavir.J467400.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference