Pvi-MIR172c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   ATCGAGTTT      GC   A AAT    A      -     --------        AA CGCCTATATATGGCACCCCGGTCTGGCGGTCT
            GGAGAT  ATG G   CTTG TGATGC TGCAT        CCGCAGAC  G                                
            ||||||  ||| |   |||| |||||| |||||        ||||||||  |                                G
            CTTCTA  TAC C   GAAT ACTACG ACGTA        CGGTGTTC  G                                
GACTGTTGTTTG      GT   - CAT    G      T     TACAAAAC        -- CACGAACGTAACGCCGTGGCTCCGTATCACTA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.2KG144300.1 0.5 NA NA
Pavir.2NG102600.1 0.5 0 NA
Pavir.3KG118100.1 0.5 NA NA
Pavir.7NG082800.1 0.5 NA NA
Pavir.9NG037700.1 0.5 0 NA
Pavir.J505900.1 0.5 0 NA
Pavir.4KG334800.1 1.5 NA NA
Pavir.4NG252600.1 1.5 NA NA
Pavir.6KG103400.1 1.5 NA NA
Pavir.6NG166300.1 1.5 0 NA
Pavir.2NG522000.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference