Pvi-MIR172e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
ATCA      -----         C                  A     --T  ATG
    GCTAGT     GATTTCTGG GTGGCATCATCAAGATTC CACAC   GC   
    ||||||     ||||||||| |||||||||||||||||| |||||   ||    
    CGATCG     CTAAAGGTT CGTCGTAGTAGTTCTAAG GTGTG   CG   
   G      GGAAA         A                  G     TAT  ACT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.4KG334800.1 0.5 NA NA
Pavir.4NG252600.1 0.5 NA NA
Pavir.6NG166300.1 0.5 0 NA
Pavir.2KG144300.1 1.0 NA NA
Pavir.2NG102600.1 1.0 0 NA
Pavir.3KG118100.1 1.0 NA NA
Pavir.7NG082800.1 1.0 NA NA
Pavir.9NG037700.1 1.0 0 NA
Pavir.J505900.1 1.0 0 NA
Pavir.7KG421100.1 1.5 NA NA
Pavir.7NG380500.1 1.5 NA NA
Pavir.6KG103400.1 2.0 NA NA
Pavir.6KG172000.1 2.0 NA NA
Pavir.9KG481900.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference