Pvi-MIR172g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AGAAGTTGG                             A  -   -A  -   T      GTT   A    CT
           TGTTCTCCAGTGCGGCATCATCAGGATTC CA CCA  TA TAA TCGGGT   ACC TGCA  
           ||||||||||||||||||||||||||||| || |||  || ||| ||||||   ||| ||||   
           ACAAGAGGTTACGTCGTAGTAGTCCTAAG GT GGT  AT GTT GGCTCG   TGG ATGT  
CAAGTCAGTGA                             A  C   AC  C   T      GCC   -    AT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.2KG144300.1 0.0 NA NA
Pavir.2NG102600.1 0.0 0 NA
Pavir.3KG118100.1 0.0 NA NA
Pavir.7NG082800.1 0.0 NA NA
Pavir.9NG037700.1 0.0 0 NA
Pavir.J505900.1 0.0 0 NA
Pavir.4KG334800.1 1.0 NA NA
Pavir.4NG252600.1 1.0 NA NA
Pavir.6NG166300.1 1.0 0 NA
Pavir.2NG522000.1 1.5 1 NA
Pavir.2KG058000.1 2.0 NA NA
Pavir.5KG501400.1 2.0 2 NA
Pavir.8NG211600.1 2.0 NA NA
Pavir.9KG073200.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference