Pvi-MIR319a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
        T AT   C   C   A A                 CT      A     TA         ----   G  G   AC        C  CA   C    ---AA  GC
    GTGT G  GGC GGA GGA G GAGCGTCCTTCAGTCCA  CAGGGG GGTGC  GGGGTCGAA    TTA CT CCG  TCATTCAC CA  TGC AAGC     CC  
    |||| |  ||| ||| ||| | |||||||||||||||||  |||||| |||||  |||||||||    ||| || |||  |||||||| ||  ||| ||||     ||  C
    CATA C  TCG CCT CCT C CTCGTGGGAAGTCAGGT  GTTTCT CCACG  CTCTAGCTT    AAT GA GGC  AGTAAGTG GT  ACG TTCG     GG  
ATTT    - GT   T   -   C -                 TC      A     --         CCAA   G  G   GA        A  AC   A    AGAAA  TA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.1KG066900.1 1.5 NA NA
Pavir.2KG036700.1 1.5 1 NA
Pavir.2NG040500.1 1.5 1 NA
Pavir.9NG079800.1 1.5 1 NA
Pavir.9NG501700.1 1.5 1 NA
Pavir.3KG547300.1 2.0 2 NA
Pavir.3NG279000.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference