PmiREN: Plant microRNA Encyclopedia

Pvi-MIR390d

Basic info.

miRNA locus ID
Pvi-MIR390d

miRNA locus accession
PmiREN016404

Organism
Panicum virgatum

Genomic location
Pvi-Chr09N 3189251 3189435 +

Comments
A member of family MIR390

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   AG    T       T  T  A         G         CTA   AATCAC     T      A    G              -   -  TGC
     GGTA GGAACAA CC TG AGCTCAGGA GGATAGCGC   GGA      TAGAT GGAGCC TGAG AGAAAGAGATCGAG AGA CG   
     |||| ||||||| || || ||||||||| |||||||||   |||      ||||| |||||| |||| |||||||||||||| ||| ||   G
     CCAT TCTTGTT GG AC TCGAGTCCT TCTATCGCG   TCT      ATCTG TCTTGG ACTC TCTTTCTCTGGCTC TCT GC   
ACACA    -       C  C  C         A         AAG   --AACT     -      A    -              G   A  TAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.7KG262500.1	0.0	NA	NA
Pavir.7KG265300.1	0.0	NA	NA
Pavir.7NG331300.1	0.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Nanoparticle titanium dioxide affects the growth and microRNA expression of switchgrass (Panicum virgatum). Genomics, 2018