Pvi-MIR393b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AAC    C           A                T     A   TT  TTC   TCTTCCATGGTGC
     AATG CTGGGGGAAGC TCCAAAGGGATCGCAT GATCC TCG  CC   CAT             
     |||| ||||||||||| |||||||||||||||| ||||| |||  ||   |||             G
     TTAC GATCTCCTTCG AGGTTTTCCTAGCGTA CTAGG AGT  GG   CAC             
CCTCA    C           G                -     C   TC  ---   GAACATCTGCTGC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.3KG150200.1 1.0 NA NA
Pavir.3KG361100.1 1.0 NA NA
Pavir.7NG142100.1 1.0 NA NA
Pavir.7NG143000.1 1.0 0 NA
Pavir.9NG624600.1 1.0 NA NA
Pavir.7KG368800.1 2.0 1 NA
Pavir.7NG446700.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference