PmiREN: Plant microRNA Encyclopedia

Pvi-MIR394a

Basic info.

miRNA locus ID
Pvi-MIR394a

miRNA locus accession
PmiREN016410

Organism
Panicum virgatum

Genomic location
Pvi-Chr01K 69057898 69058022 +

Comments
A member of family MIR394

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     C       TGGG      -      TTC           TTGCTGATCTT     AAGCCT
   GG GGCTTAC    AGTTCC TTGGCA   TGTCCACCTCC           GCAGA      
   || |||||||    |||||| ||||||   |||||||||||           |||||       
   CC CCGGATG    TCAAGG AACCGT   ACGGGTGGAGG           TGTCT      
TTC  T       --TG      T      CTT           -TTTTTGTGTT     AAACTC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.5KG742100.1	0.0	NA	NA
Pavir.J261800.1	0.0	NA	NA
Pavir.3NG011700.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvi-MIR394a

>