Pvi-MIR394c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     C       TGGG      -      TTC           TTGCT   CAT     ---   C
   GG GGCTTAC    AGTTCC TTGGCA   TGTCCACCTCC     GAT   GCAGA   GAG 
   || |||||||    |||||| ||||||   |||||||||||     |||   |||||   ||| C
   CC CCGGATG    TCGAGG AACCGT   ACGGGTGGAGG     TTG   TGTCT   CTC 
TTC  T       --TG      T      CAT           --TTT   TGT     AAA   T

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.5KG742100.1 0.0 NA NA
Pavir.J261800.1 0.0 NA NA
Pavir.3NG011700.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference