Pvi-MIR396e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TTCA -    -----       GC                   A     CTCTCTCTC    AAT    -G  GC
    A GTCC     ATGCCAT  CTTTCCACAGCTTTCTTGA CTTCT         TCTG   CAAT  GC  
    | ||||     |||||||  ||||||||||||||||||| |||||         ||||   ||||  ||   
    T CAGG     TACGGTA  GAAGGGTGTCGAAAGAACT GAAGA         AGAT   GTTG  CG  
     T    AATAA       AA                   G     ---------    GGT    AA  TG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.1KG523400.1 1.5 NA NA
Pavir.3KG179600.1 1.5 NA NA
Pavir.5NG646100.1 1.5 NA NA
Pavir.1KG229300.1 2.0 NA NA
Pavir.1KG523500.1 2.0 NA NA
Pavir.1NG501700.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference