Pvi-MIR396f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    AA    G     G    C      CA                G   ------TC     GGCATGTCGGATGAACGCAAAACCCCCCGCAATTCTCTTCC
      AGGT CGCGG CATG TTTCCA  GGCTTTCTTGAACTGT AAC        GTGGG                                         
      |||| ||||| |||| ||||||  |||||||||||||||| |||        |||||                                         C
      TCCG GCGTT GTAC AAAGGT  CCGAAAGAACTTGGTA TTG        GGCGG                                         
GTGTTC    -     -    T      AC                G   TCCATCTC     GAAACCGCTCGGCTCTCTCGAGCCGTTAAGAGTTAAGTGCC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.1KG447800.1 0.0 0 NA
Pavir.1KG465300.1 0.0 0 NA
Pavir.1NG422000.1 0.0 0 NA
Pavir.1NG442300.1 0.0 NA NA
Pavir.1NG526200.1 0.0 NA NA
Pavir.1NG528000.1 0.0 NA NA
Pavir.4KG002600.1 0.0 NA NA
Pavir.4KG175500.1 0.0 NA NA
Pavir.4NG030200.1 0.0 0 NA
Pavir.4NG128900.1 0.0 0 NA
Pavir.7KG300700.1 0.0 NA NA
Pavir.7NG320500.1 0.0 NA NA
Pavir.9KG054200.1 0.0 0 NA
Pavir.9NG094400.1 0.0 0 NA
Pavir.2KG080500.1 1.5 NA NA
Pavir.2NG139700.1 1.5 1 NA
Pavir.8KG269000.1 1.5 2 NA
Pavir.8NG136500.1 1.5 NA NA
Pavir.9NG120800.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference