Pvi-MIR397a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 AA     -C        ATC                A        C G     AG
   AGGGG  GCGAAGGC   ATTGAGTGCAGCGTTG TGAGCCGC G CGGCG  
   |||||  ||||||||   |||||||||||||||| |||||||| | |||||  G
   TCTCT  CGTTTCCG   TAACTCACGTCGCGGC ACTCGGCG C GCCGC  
CGG     CT        CAA                C        C G     CT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.5NG584800.1 0.0 NA NA
Pavir.3KG266100.1 0.5 NA NA
Pavir.3NG168900.1 0.5 1 NA
Pavir.5KG622300.1 0.5 NA NA
Pavir.5KG629500.1 1.5 1 NA
Pavir.1KG064200.1 2.0 1 NA
Pavir.2KG017500.1 2.0 NA NA
Pavir.4NG191400.1 2.0 NA NA
Pavir.5KG610700.1 2.0 NA NA
Pavir.5KG613400.1 2.0 NA NA
Pavir.5KG622200.1 2.0 NA NA
Pavir.5KG629300.1 2.0 NA NA
Pavir.5KG634700.1 2.0 NA NA
Pavir.5KG661200.1 2.0 NA NA
Pavir.5NG569300.1 2.0 NA NA
Pavir.5NG584700.1 2.0 NA NA
Pavir.8KG057100.1 2.0 NA NA
Pavir.8KG103400.1 2.0 NA NA
Pavir.8KG177500.1 2.0 NA NA
Pavir.9KG493900.1 2.0 NA NA
Pavir.9NG438800.1 2.0 1 NA
Pavir.9NG700300.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference