Pvi-MIR398b

Basic info.

• miRNA locus ID
• Pvi-MIR398b

• miRNA locus accession
• PmiREN016429

• Organism
• Panicum virgatum

• Genomic location
• Pvi-Chr02N  34759289  34759411  -

• Comments
• A member of family MIR398

• Confidence level
• 

Secondary strurture and sequence

  GAAC       A T   T  A           C          GA  ATTACCGCCCCGC
      GCAAGGG G TCC GC GGGGCGACCTG GAACACATGC  GG             
      ||||||| | ||| || ||||||||||| ||||||||||  ||             T
      CGTTCCT C GGG CG CCCCGCTGGAC CTTGTGTACG  CG             
CGCGGT       C C   C  C           T          TA  GGATGGGCCGCCG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference