Pvi-MIR399b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TCCT     --    A   T      TT      C         A C  GC      -     CT
    AAGCT  GTCC GTT CAGGGC  CTCTTT TTGGCAGGG G GT  GAATCG GTAGA  
    |||||  |||| ||| ||||||  |||||| ||||||||| | ||  |||||| |||||  A
    TTCGA  CAGG CGA GTCCCG  GAGAGG AACCGTCTC C CA  CTTGGC CGTCT  
GGAA     CC    A   T      TT      A         - -  -A      T     CG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.5NG478600.1 0.5 0 NA
Pavir.3KG294200.1 1.5 NA NA
Pavir.3KG295800.1 1.5 NA NA
Pavir.7NG002300.1 1.5 1 NA
Pavir.5KG579600.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference