Pvi-MIR399c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TTCT     --    A   T      TT      C       -  --A  C  -T   A     TAG
    AAGCT  GTCC GTT CAGGGC  CTCTTT TTGGCAG GG   GA CG  GTG AGCTG   
    |||||  |||| ||| ||||||  |||||| ||||||| ||   || ||  ||| |||||    
    TTCGA  CAGG CGA GTCCCG  GAGAGG AACCGTC CC   CT GC  CGT TCGAT   
GGAA     CC    A   T      TT      A       T  AAA  T  CT   C     GTC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.5NG478600.1 0.5 0 NA
Pavir.3KG294200.1 1.5 NA NA
Pavir.3KG295800.1 1.5 NA NA
Pavir.7NG002300.1 1.5 1 NA
Pavir.5KG579600.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference